This page summarises the main software packages produced by the Jefferis Lab in the area of neuroscience, principally computational neuroanatomy. All of this software has been written for both internal and external use. It has been developed as open source with software best practices including online documentation, sample code, version control, unit tests, continuous integration, code coverage etc.
These packages are currently being intregrated into the natverse, to facilitate their distribution and documentation. We recommend that you read about the natverse and all of its packages at its own website, natverse.github.io. If you wish, you can find more about any package by clicking on the docs badge. To ask for help, please head over to the nat-user google group.
nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
nat.templatebrains
nat.flybrains
nat.nblast
flycircuit
catmaid
elmr
