Uploads neurons to CATMAID, names them and annotates them. Please use with caution, as you could be heavily adding to a live tracing environment.

catmaid_upload_neurons(swc = NULL, name = "neuron SWC upload",
  annotations = NULL, include.tags = TRUE, include.connectors = TRUE,
  return.new.skids = FALSE, pid = 1, conn = NULL, max.upload = 10,
  ...)

Arguments

swc

a neuron or neuronlist object, or (a) local file path(s) to your saved .swc file(s).

name

whatever you want to name your uploaded neurons. If a single character, then it will be added to all uploaded neurons. Else, can be a character vector the same length as swc.

annotations

a character vector of annotations, to be added to all of the uploaded neurons

include.tags

whether of not, if swc is a CATMAID neuron/neuronlist, to transfer its tags to its newly uploaded cognate

include.connectors

whether of not, if swc is a CATMAID neuron/neuronlist, to transfer its connectors to its newly uploaded cognate

return.new.skids

if TRUE, the new skids created in the CATMAID instance specified by conn, are returned

pid

project id. Defaults to 1

conn

CATMAID connection object, see ?catmaid::catmaid_login for details

max.upload

the maximum number of files that the function will allow you to upload at once

...

methods passed to catmaid::catmaid_fetch