Reads neurons (or node count data) from the temporary FAFB segmentation instance. containing auto-segmented fragments from Peter Li. Neurons can also be read using a neuroglancer server fafbseg::read.neurons.brainmaps or fafbseg::read_segments2 if from local .zip files

read.neurons.fafbseg(x, google = FALSE, conn = NULL, ...)

fafbseg_get_node_count(x, read.from = c("CATMAID", "Neuroglancer",
  "local"), ...)

Arguments

x

typically a skeleton ID in from the CATMAID FAFB v14-seg instance neuroglancer ID.

google

if TRUE, we treat x as the name of a Google FAFB segment. If name = FALSE, then x can be skeleton ids (numeric or characters) or the name / annotation for a neuron, if given as a character starting with 'name:' or 'annotation:' respectively. When Google FAFB fragments are merged, one name is maintained and the other may be found as an annotation. In order to check for this, annotations can also be read.

conn

a CATMAID connection object. If NULL catmaid::catmaid::catmaid_login() is called.

...

methods passed to catmaid::read.neurons.catmaid

read.from

from where to read FAFB segmented skeletons to generate node count data