R/editcatmaid.R
catmaid_find_likely_merge.RdFind the location of tags in a CATMAID neuron, either as URLs to the location of a TODO tag in CATMAID or as a data.frame reporting the location and skeleton treenode locations of specified tags.
catmaid_find_likely_merge(TODO, skid = NULL, fafbseg = FALSE, min_nodes = 2, search.range.nm = 1000, pid = 1, conn = conn, ...)
| TODO | a data.frame, as returned by catmaid_get_tag with tag = "TODO" (or a different tag indicative of a merge point) and url = FALSE |
|---|---|
| skid | the skeleton ID of a neuron for which merges are to be found. If NULL, the skeleton ID is taken as the rowname of the TODO data frame |
| fafbseg | whether or not to use fafbseg::read_brainmaps_meshes on the TODO tag locations and restrict possible merges to neurons within the search range and within the cognate auto-segmented volume |
| min_nodes | the minimum number of nodes a potential merger skeleton needs to have |
| search.range.nm | the maximum distance from which to search from the TODO point tag to find potential mergers |
| pid | project id. Defaults to 1 |
| conn | CATMAID connection object, see ?catmaid::catmaid_login for details |
| ... | methods passed to catmaid::catmaid_fetch |