R/neurites.R
extract_cable.RdExtract axonic/dendritic/mixed/primary dendrite points/endpoints/cable from a neuron/neuronlist object
axonic_points(x, ...) dendritic_points(x, ...) mixed_points(x, ...) primary_dendrite_points(x, ...) # S3 method for neuron axonic_points(x) # S3 method for neuron dendritic_points(x) # S3 method for neuron mixed_points(x) # S3 method for neuron primary_dendrite_points(x) # S3 method for neuronlist dendritic_points(x, ...) # S3 method for neuronlist axonic_points(x, ...) # S3 method for neuronlist mixed_points(x, ...) # S3 method for neuronlist primary_dendrite_points(x, ...) axonal_endings(x) dendritic_endings(x) axonic_endings(x) primary_dendrite_endings(x) axonic_cable(x, ...) dendritic_cable(x, ...) arbour_cable(x, ...) unsure_cable(x, ...) primary_dendrite_cable(x, ...) # S3 method for neuron axonic_cable(x, mixed = FALSE, ...) # S3 method for catmaidneuron axonic_cable(x, mixed = FALSE, ...) # S3 method for neuron dendritic_cable(x, mixed = FALSE, ...) # S3 method for catmaidneuron dendritic_cable(x, mixed = FALSE, ...) # S3 method for neuron arbour_cable(x, mixed = FALSE, ...) # S3 method for catmaidneuron arbour_cable(x, mixed = FALSE, ...) # S3 method for neuron unsure_cable(x, mixed = FALSE, ...) # S3 method for catmaidneuron unsure_cable(x, mixed = FALSE, ...) # S3 method for neuron primary_dendrite_cable(x, ...) # S3 method for catmaidneuron primary_dendrite_cable(x, ...) # S3 method for neuronlist axonic_cable(x, mixed = FALSE, ...) # S3 method for neuronlist dendritic_cable(x, mixed = FALSE, ...) # S3 method for neuronlist arbour_cable(x, mixed = FALSE, ...) # S3 method for neuronlist unsure_cable(x, ...) # S3 method for neuronlist primary_dendrite_cable(x, ...)
| x | a neuron/neuronlist object that has its axons/dendrites labelled in swc format in its neuron$d dataframes |
|---|---|
| ... | additional arguments passed to methods |
| mixed | whether or not to include points assigned as uncertain or mixed polarity cable |
a matrix of 3D points