Functions to assign and visualise microtubule rich and twig portions of a neuron

Manually assign the dendrite and axon to neurons / a neuron

mark.microtubules(x, ...)

# S3 method for neuron
mark.microtubules(x, ...)

# S3 method for neuronlist
mark.microtubules(x, ...)

prune_microtubules(x, ...)

# S3 method for neuron
prune_microtubules(x, microtubules = TRUE, ...)

# S3 method for neuronlist
prune_microtubules(x, microtubules = TRUE, ...)

visualise.microtubules(x, soma = TRUE, WithConnectors = FALSE, ...)

microtubules.errors(skid)

Arguments

x	a neuron/neuronlist object
...	Additional arguments passed to nlapply
microtubules	whether to return the microtubule containing arbour (TRUE) or twigs (FALSE)
soma	for visualise.microtubules whether to show the soma
WithConnectors	for visualise.microtubules whether to show connectors
skid	skeleton ID of CATMAID neuron for checking whether there are presynapses marked as being on a microtubule-lacking twig

Value

The neuron/neuronlist object with axon/dendrite info assigned in SWC format to neuron$d