R/flycircuit.R
nblast_bothways.RdNBLAST two different sets of neurons forwards and backwards, and take the mean of these results
nblast_bothways(group1, group2 = group1, smat = NULL, sd = 3, version = c(2, 1), normalised = FALSE, UseAlpha = FALSE, OmitFailures = NA)
| group1 | a neuronlist object |
|---|---|
| group2 | a neuronlist object, defaults to group1 |
| smat | the score matrix to be used. See ? |
| sd | Standard deviation to use in distance dependence of nblast v1 algorithm. Ignored when version=2 |
| version | the version of the algorithm to use (the default, 2, is the latest) |
| normalised | whether to divide scores by the self-match score of the query |
| UseAlpha | whether to consider local directions in the similarity calculation (default: FALSE) |
| OmitFailures | Whether to omit neurons for which FUN gives an error. The default value (NA) will result in nblast stopping with an error message the moment there is an error |
| ... | additional arguments passed to methods |
a dotprops object