Plot neurons split up by flow centrality
seesplit3d(someneuronlist, col = c("blue", "orange", "purple", "green", "grey", "pink"), splitnode = FALSE, WithConnectors = TRUE, WithNodes = F, soma = 100, highflow = F, lwd = 1, radius = 1, ...) splitscan(someneuronlist, col = c("blue", "orange", "purple", "green", "grey", "pink"), WithConnectors = T, WithNodes = F, soma = 100, highflow = F, Verbose = T, Wait = T, sleep = 0.1, extrafun = NULL, selected_file = NULL, selected_col = "black", yaml = TRUE, ...)
| someneuronlist | a neuronlist or neuron object that has been modified by flow.centrality |
|---|---|
| col | colours of sections. Defaults to orange or axons, green for primary dendrite, blue for dendrites and pink for nodes with no flow. |
| splitnode | if TRUE, a magenta sphere is placed at the location of the axon-dendrite split. Possible a putative action potential initiation site? |
| WithConnectors | whether ot plot the anatomical location of pre (red) and post (cyan) synapses. |
| WithNodes | whether to plot branch points |
| soma | whether to plot a soma, and what the radius should be |
| highflow | whether to plot the nodes of highest (with in one standard deviation less than maximum) flow centrality (pink points) |
| lwd | Line width (default 1) |
| radius | For connectors and axon-dendrite split node (default 1) |
| ... | additional arguments passed to methods. |
| Verbose | logical indicating that info about each selected neuron should be printed (default TRUE) |
| Wait | logical indicating that there should be a pause between each displayed neuron |
| sleep | time to pause between each displayed neuron when Wait=TRUE |
| extrafun | an optional function called when each neuron is plotted, with two arguments: the current neuron name and the current selected neurons |
| selected_file | an optional path to a yaml file that already contains a selection |
| selected_col | the color in which selected neurons (such as those specified in selected_file) should be plotted |
| yaml | a logical indicating that selections should be saved to disk in (human-readable) yaml rather than (machine-readable) rda format |
Plots coloured neuron(s)