Functions for retrieving data about somata from skeletons, that has been assigned in CATMAID using the tag system
soma(x, ...) # S3 method for neuronlist soma(x, ...) # S3 method for neuron soma(x, ...) somaid(x, ...) # S3 method for neuronlist somaid(x, ...) # S3 method for neuron somaid(x, ...) somapos(x, ...) # S3 method for neuronlist somapos(x, ...) # S3 method for neuron somapos(x)
| x | a neuron or neuronlist object |
|---|---|
| ... | additional arguments passed to methods |
Either the soma's 3D coordinates (soma) its id number (somaid) or its position in the neuron's skeleton (somapos)
CATMAID access required. Data collected and described in cited publication.
Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JV, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW, et al. (2015) A multilevel multimodal circuit enhances action selection in Drosophila. Nature.