Some functions that quickly visualise tracer effort, or retrieve data to do with tracer effort.
tracer.plot(names = c("Alex Bates", "Ruairi Roberts", "Greg Jefferis", "Clement Hallou", "Philipp Ranft", "Philipp Schlegel", "Fiona Love", "Amelia Edmondson-Stait"), calc.date = "2016-04-01", from.date = "2016-04-01", to.date = Sys.Date(), cumulative = T, ...) tracer.treenodes.plot(skids = NULL, names = c("Alex Bates", "Ruairi Roberts", "Greg Jefferis", "Clement Hallou", "Philipp Ranft", "Philipp Schlegel", "Fiona Love", "Amelia Edmondson-Stait"), from.date = "2016-04-01", to.date = Sys.Date(), ...) tracer.neuron.stats(skids, value = c("nodes", "pre", "post"), ...)
names | Full names of tracers |
---|---|
calc.date | The date from which to retrieve data for the graphs |
from.date | The date from which to plot the graphs |
to.date | The date to which to plot the graphs |
cumulative | Whether to generate a cumulative plot. Defaults to true. |
... | additional arguments passed to methods. |
skids | The skids of the neurons to consider |
value | Whether to look at tree node, pre synapse connector or post synaptic node data. |
tracer.plot() returns a plot for cable length traced and connectors placed by named tracers. tracer.treenodes.plot() visualises data on node generation.