primary_neurites.is2 is in the IS2 template brain space
(Jefferis Lab).
primary_neurites.jfrc2 is in the JFRC2 template brain
space (Janelia / Virtual Fly Brain).
primary_neurites.is2 primary_neurites.jfrc2
An object of class neuronlist (inherits from list) of length 48.
This is initally created by data-raw/pct.R which in turn
depends on LHNTracing/R/MakeParentClusters.R.
head(primary_neurites.is2)#> $`00_52D03` #> $NeuronName #> [1] "00_52D03-000" #> #> $InputFileName #> [1] "/Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc" #> #> $CreatedAt #> [1] "2016-12-20 17:02:31 WET" #> #> $NodeName #> nodename #> "jefferis-tdisplay-1.lmb.internal" #> #> $InputFileStat #> size #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 5916 #> isdir #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc FALSE #> mode #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 644 #> mtime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 2016-11-07 16:33:14 #> ctime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 2016-11-07 16:33:14 #> atime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 2016-12-20 17:02:31 #> uid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 501 #> gid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc 20 #> uname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc jefferis #> grname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc staff #> #> $InputFileMD5 #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_52D03-000.swc #> "f150771c13fb407763593876bc1beac2" #> #> $NumPoints #> [1] 87 #> #> $StartPoint #> [1] 1 #> #> $BranchPoints #> integer(0) #> #> $EndPoints #> [1] 1 87 #> #> $nTrees #> [1] 1 #> #> $NumSegs #> [1] 1 #> #> $SegList #> [[1]] #> [1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 #> [51] 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 #> [76] 76 77 78 79 80 81 82 83 84 85 86 87 #> #> attr(,"class") #> [1] "seglist" "list" #> #> $d #> PointNo Label X Y Z W Parent #> 1 1 0 47.67994 186.1138 57.62433 0 -1 #> 2 2 0 47.60390 185.6176 58.55266 0 1 #> 3 3 0 47.53790 185.1145 59.47484 0 2 #> 4 4 0 47.48274 184.6051 60.38987 0 3 #> 5 5 0 47.99242 183.9891 61.39469 0 4 #> 6 6 0 48.02001 183.3645 61.52918 0 5 #> 7 7 0 48.05393 182.7421 61.66020 0 6 #> 8 8 0 48.09441 182.1224 61.78742 0 7 #> 9 9 0 48.69987 181.4067 61.99964 0 8 #> 10 10 0 49.31446 180.6975 62.19865 0 9 #> 11 11 0 49.37299 180.0910 62.31102 0 10 #> 12 12 0 49.99833 179.3965 62.49080 0 11 #> 13 13 0 50.06540 178.8007 62.59359 0 12 #> 14 14 0 50.74931 178.0312 62.01374 0 13 #> 15 15 0 50.82262 177.4484 62.10956 0 14 #> 16 16 0 51.50866 176.7011 61.51543 0 15 #> 17 17 0 51.58560 176.1322 61.60504 0 16 #> 18 18 0 51.66491 175.5682 61.69151 0 17 #> 19 19 0 52.28630 174.9435 61.81636 0 18 #> 20 20 0 52.42556 174.3041 61.16214 0 19 #> 21 21 0 53.01876 174.1543 60.45735 0 20 #> 22 22 0 53.61998 173.5591 60.56034 0 21 #> 23 23 0 54.21019 172.9771 60.65097 0 22 #> 24 24 0 54.27820 172.4526 60.72457 0 23 #> 25 25 0 54.85089 171.8909 60.80141 0 24 #> 26 26 0 54.91316 171.3785 60.87093 0 25 #> 27 27 0 54.97473 170.8706 60.93910 0 26 #> 28 28 0 55.03532 170.3672 61.00616 0 27 #> 29 29 0 55.09461 169.8683 61.07233 0 28 #> 30 30 0 55.15231 169.3737 61.13782 0 29 #> 31 31 0 55.67969 168.8574 61.19796 0 30 #> 32 32 0 55.72878 168.3733 61.26235 0 31 #> 33 33 0 55.77592 167.8930 61.32658 0 32 #> 34 34 0 55.36284 167.4372 61.39679 0 33 #> 35 35 0 55.47262 166.8875 60.74646 0 34 #> 36 36 0 55.51915 166.4165 60.81221 0 35 #> 37 37 0 55.56408 165.9481 60.87764 0 36 #> 38 38 0 55.60754 165.4819 60.94273 0 37 #> 39 39 0 55.64965 165.0176 61.00745 0 38 #> 40 40 0 55.62558 164.6246 61.77778 0 39 #> 41 41 0 55.66492 164.1622 61.84012 0 40 #> 42 42 0 55.70335 163.7007 61.90208 0 41 #> 43 43 0 55.74102 163.2397 61.96362 0 42 #> 44 44 0 55.77805 162.7790 62.02472 0 43 #> 45 45 0 55.81460 162.3182 62.08536 0 44 #> 46 46 0 55.85078 161.8569 62.14552 0 45 #> 47 47 0 55.88675 161.3949 62.20517 0 46 #> 48 48 0 55.92263 160.9316 62.26429 0 47 #> 49 49 0 55.95857 160.4669 62.32286 0 48 #> 50 50 0 55.99471 160.0004 62.38086 0 49 #> 51 51 0 56.03117 159.5316 62.43825 0 50 #> 52 52 0 56.06810 159.0604 62.49502 0 51 #> 53 53 0 56.17307 158.5288 61.85915 0 52 #> 54 54 0 56.21097 158.0528 61.91491 0 53 #> 55 55 0 55.84711 157.5834 61.97481 0 54 #> 56 56 0 55.88785 157.1022 62.02827 0 55 #> 57 57 0 55.92894 156.6185 62.08040 0 56 #> 58 58 0 55.97035 156.1327 62.13105 0 57 #> 59 59 0 55.54531 155.7056 62.87125 0 58 #> 60 60 0 55.51948 155.2680 63.60900 0 59 #> 61 61 0 55.56500 154.7755 63.65584 0 60 #> 62 62 0 55.61074 154.2817 63.70100 0 61 #> 63 63 0 55.25906 153.7964 63.73891 0 62 #> 64 64 0 55.30679 153.3011 63.78029 0 63 #> 65 65 0 55.35456 152.8052 63.81962 0 64 #> 66 66 0 55.40230 152.3088 63.85677 0 65 #> 67 67 0 55.77575 151.8494 64.59552 0 66 #> 68 68 0 55.75681 151.4022 65.32972 0 67 #> 69 69 0 55.80535 150.9043 65.36461 0 68 #> 70 70 0 55.78800 150.4584 66.10121 0 69 #> 71 71 0 55.77106 150.0142 66.84098 0 70 #> 72 72 0 55.75458 149.5721 67.58477 0 71 #> 73 73 0 56.12557 149.1095 68.33522 0 72 #> 74 74 0 56.17715 148.6159 68.37240 0 73 #> 75 75 0 56.16214 148.1790 69.12806 0 74 #> 76 76 0 56.14727 147.7445 69.88947 0 75 #> 77 77 0 56.07825 147.7995 70.61296 0 76 #> 78 78 0 56.06267 147.3672 71.38388 0 77 #> 79 79 0 56.04693 146.9365 72.16102 0 78 #> 80 80 0 56.10209 146.4537 72.21074 0 79 #> 81 81 0 55.77336 146.0092 72.25444 0 80 #> 82 82 0 55.82855 145.5330 72.30248 0 81 #> 83 83 0 55.88297 145.0590 72.34970 0 82 #> 84 84 0 56.00377 144.5331 71.64621 0 83 #> 85 85 0 56.11950 144.0076 70.93193 0 84 #> 86 86 0 56.22960 143.4818 70.20602 0 85 #> 87 87 0 56.33351 142.9547 69.46772 0 86 #> #> attr(,"class") #> [1] "neuron" "list" #> #> $`00_583B` #> $NeuronName #> [1] "00_MB583B-000" #> #> $InputFileName #> [1] "/Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc" #> #> $CreatedAt #> [1] "2016-12-20 17:02:31 WET" #> #> $NodeName #> nodename #> "jefferis-tdisplay-1.lmb.internal" #> #> $InputFileStat #> size #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 13182 #> isdir #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc FALSE #> mode #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 644 #> mtime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 2016-12-20 16:44:59 #> ctime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 2016-12-20 16:44:59 #> atime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 2016-12-20 17:02:31 #> uid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 501 #> gid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc 20 #> uname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc jefferis #> grname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc staff #> #> $InputFileMD5 #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/00_MB583B-000.swc #> "39d55bcb33cd7162ab06d8f6f57cb879" #> #> $NumPoints #> [1] 194 #> #> $StartPoint #> [1] 1 #> #> $BranchPoints #> [1] 89 #> #> $EndPoints #> [1] 1 142 194 #> #> $nTrees #> [1] 1 #> #> $NumSegs #> [1] 3 #> #> $SegList #> [[1]] #> [1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 #> [51] 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 #> [76] 76 77 78 79 80 81 82 83 84 85 86 87 88 89 #> #> [[2]] #> [1] 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 #> [20] 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 #> [39] 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 #> #> [[3]] #> [1] 89 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 #> [20] 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 #> [39] 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 #> #> attr(,"class") #> [1] "seglist" "list" #> #> $d #> PointNo Label X Y Z W Parent #> 1 1 0 63.99729 182.5634 129.9669 0 -1 #> 2 2 0 63.90204 182.1895 129.8518 0 1 #> 3 3 0 63.36173 181.8168 129.6924 0 2 #> 4 4 0 63.26808 181.4445 129.5786 0 3 #> 5 5 0 62.73285 181.0720 129.4191 0 4 #> 6 6 0 62.64200 180.7003 129.3063 0 5 #> 7 7 0 62.11401 180.3270 129.1462 0 6 #> 8 8 0 61.59182 179.9532 128.9863 0 7 #> 9 9 0 61.07629 179.5788 128.8267 0 8 #> 10 10 0 60.56819 179.2036 128.6675 0 9 #> 11 11 0 60.07729 178.9295 127.8035 0 10 #> 12 12 0 60.00556 178.5534 127.6869 0 11 #> 13 13 0 59.94508 178.2803 126.8657 0 12 #> 14 14 0 59.88707 178.0083 126.0451 0 13 #> 15 15 0 60.25556 177.7450 125.2743 0 14 #> 16 16 0 60.18811 177.3730 125.1626 0 15 #> 17 17 0 60.56044 177.1177 124.4008 0 16 #> 18 18 0 60.51247 176.8525 123.5832 0 17 #> 19 19 0 60.89283 176.6049 122.8278 0 18 #> 20 20 0 60.82963 176.2370 122.7208 0 19 #> 21 21 0 60.76969 175.8691 122.6141 0 20 #> 22 22 0 60.71287 175.5012 122.5075 0 21 #> 23 23 0 60.65905 175.1335 122.4010 0 22 #> 24 24 0 60.60810 174.7659 122.2947 0 23 #> 25 25 0 60.55990 174.3984 122.1884 0 24 #> 26 26 0 60.09198 173.9013 122.7197 0 25 #> 27 27 0 59.63957 173.4044 123.2507 0 26 #> 28 28 0 59.59626 172.9216 123.8560 0 27 #> 29 29 0 59.55571 172.4361 124.4631 0 28 #> 30 30 0 59.51720 171.9477 125.0722 0 29 #> 31 31 0 59.48008 171.4564 125.6835 0 30 #> 32 32 0 59.06463 170.9516 126.2132 0 31 #> 33 33 0 59.03216 170.4553 126.8268 0 32 #> 34 34 0 59.00244 170.0794 126.7210 0 33 #> 35 35 0 58.60037 169.5705 127.2533 0 34 #> 36 36 0 58.56913 169.0672 127.8710 0 35 #> 37 37 0 58.53617 168.5608 128.4919 0 36 #> 38 38 0 58.50521 168.1794 128.3867 0 37 #> 39 39 0 58.46847 167.6676 129.0113 0 38 #> 40 40 0 58.43524 167.2833 128.9065 0 39 #> 41 41 0 58.03942 166.7600 129.4473 0 40 #> 42 42 0 58.00340 166.3719 129.3420 0 41 #> 43 43 0 57.96617 165.9822 129.2365 0 42 #> 44 44 0 57.92777 165.5910 129.1309 0 43 #> 45 45 0 57.87725 165.0624 129.7644 0 44 #> 46 46 0 57.82417 164.5305 130.4024 0 45 #> 47 47 0 57.76920 163.9957 131.0452 0 46 #> 48 48 0 57.72371 163.5956 130.9428 0 47 #> 49 49 0 57.67760 163.1939 130.8407 0 48 #> 50 50 0 57.63099 162.7907 130.7389 0 49 #> 51 51 0 57.58398 162.3858 130.6375 0 50 #> 52 52 0 57.53670 161.9794 130.5366 0 51 #> 53 53 0 57.48929 161.5714 130.4361 0 52 #> 54 54 0 57.44187 161.1618 130.3364 0 53 #> 55 55 0 57.39460 160.7507 130.2373 0 54 #> 56 56 0 57.34764 160.3381 130.1391 0 55 #> 57 57 0 57.28580 159.7845 130.8035 0 56 #> 58 58 0 57.23976 159.3692 130.7085 0 57 #> 59 59 0 57.19461 158.9527 130.6147 0 58 #> 60 60 0 57.15054 158.5351 130.5221 0 59 #> 61 61 0 57.10775 158.1164 130.4310 0 60 #> 62 62 0 57.06644 157.6967 130.3413 0 61 #> 63 63 0 57.02680 157.2761 130.2532 0 62 #> 64 64 0 56.98906 156.8547 130.1670 0 63 #> 65 65 0 56.95342 156.4327 130.0826 0 64 #> 66 66 0 56.92010 156.0102 130.0003 0 65 #> 67 67 0 56.88932 155.5872 129.9202 0 66 #> 68 68 0 57.20492 155.0398 130.7227 0 67 #> 69 69 0 57.18078 154.6166 130.6486 0 68 #> 70 70 0 57.15948 154.1932 130.5769 0 69 #> 71 71 0 57.14106 153.7697 130.5076 0 70 #> 72 72 0 56.77350 153.3420 130.3433 0 71 #> 73 73 0 56.76103 152.9197 130.2796 0 72 #> 74 74 0 56.75157 152.4977 130.2185 0 73 #> 75 75 0 56.74512 152.0759 130.1600 0 74 #> 76 76 0 56.74167 151.6545 130.1041 0 75 #> 77 77 0 56.74121 151.2335 130.0509 0 76 #> 78 78 0 57.09971 150.6889 130.8909 0 77 #> 79 79 0 57.10590 150.2688 130.8428 0 78 #> 80 80 0 57.11501 149.8493 130.7972 0 79 #> 81 81 0 57.12699 149.4304 130.7540 0 80 #> 82 82 0 57.15709 148.8965 131.5186 0 81 #> 83 83 0 57.17603 148.4803 131.4809 0 82 #> 84 84 0 57.19777 148.0650 131.4454 0 83 #> 85 85 0 57.22227 147.6505 131.4120 0 84 #> 86 86 0 57.24949 147.2370 131.3808 0 85 #> 87 87 0 57.30544 146.7142 132.1636 0 86 #> 88 88 0 57.33928 146.3039 132.1369 0 87 #> 89 89 0 57.37571 145.8946 132.1120 0 88 #> 90 90 0 57.41470 145.4865 132.0889 0 89 #> 91 91 0 57.45619 145.0797 132.0675 0 90 #> 92 92 0 57.50015 144.6741 132.0476 0 91 #> 93 93 0 57.92729 144.1371 132.9272 0 92 #> 94 94 0 58.01816 143.6270 133.7303 0 93 #> 95 95 0 58.07030 143.2253 133.7150 0 94 #> 96 96 0 57.82632 142.7478 134.4430 0 95 #> 97 97 0 57.88240 142.3487 134.4314 0 96 #> 98 98 0 57.98809 141.8429 135.2444 0 97 #> 99 99 0 58.04695 141.4454 135.2358 0 98 #> 100 100 0 58.15701 140.9394 136.0532 0 99 #> 101 101 0 58.21771 140.5430 136.0476 0 100 #> 102 102 0 58.27908 140.1471 136.0434 0 101 #> 103 103 0 58.39200 139.6406 136.8665 0 102 #> 104 104 0 58.45403 139.2453 136.8653 0 103 #> 105 105 0 58.51629 138.8504 136.8654 0 104 #> 106 106 0 58.57867 138.4558 136.8669 0 105 #> 107 107 0 58.69094 137.9479 137.6973 0 106 #> 108 108 0 59.15227 137.4092 138.6151 0 107 #> 109 109 0 59.21327 137.0149 138.6215 0 108 #> 110 110 0 59.27381 136.6207 138.6293 0 109 #> 111 111 0 59.33374 136.2267 138.6385 0 110 #> 112 112 0 59.79392 135.6892 139.5679 0 111 #> 113 113 0 59.85169 135.2954 139.5804 0 112 #> 114 114 0 59.90843 134.9016 139.5944 0 113 #> 115 115 0 59.96399 134.5077 139.6098 0 114 #> 116 116 0 60.06066 133.9971 140.4610 0 115 #> 117 117 0 60.15324 133.4858 141.3138 0 116 #> 118 118 0 60.20251 133.0913 141.3344 0 117 #> 119 119 0 59.92904 132.5986 142.1003 0 118 #> 120 120 0 59.97411 132.2033 142.1240 0 119 #> 121 121 0 60.01794 131.8081 142.1487 0 120 #> 122 122 0 60.09451 131.2946 143.0065 0 121 #> 123 123 0 60.13478 130.8995 143.0331 0 122 #> 124 124 0 60.17382 130.5044 143.0604 0 123 #> 125 125 0 60.21165 130.1094 143.0881 0 124 #> 126 126 0 59.91419 129.6066 143.8618 0 125 #> 127 127 0 59.94807 129.2113 143.8914 0 126 #> 128 128 0 59.98077 128.8161 143.9211 0 127 #> 129 129 0 60.37714 128.4143 144.0342 0 128 #> 130 130 0 60.40794 128.0202 144.0631 0 129 #> 131 131 0 60.43758 127.6261 144.0918 0 130 #> 132 132 0 60.46608 127.2322 144.1202 0 131 #> 133 133 0 60.49345 126.8385 144.1482 0 132 #> 134 134 0 60.51971 126.4449 144.1757 0 133 #> 135 135 0 60.54489 126.0515 144.2026 0 134 #> 136 136 0 60.93580 125.6564 144.3056 0 135 #> 137 137 0 60.95901 125.2642 144.3297 0 136 #> 138 138 0 60.98116 124.8722 144.3527 0 137 #> 139 139 0 61.36903 124.4800 144.4483 0 138 #> 140 140 0 61.38913 124.0893 144.4677 0 139 #> 141 141 0 61.40823 123.6987 144.4856 0 140 #> 142 142 0 61.78299 123.4118 143.7399 0 141 #> 143 143 0 57.37571 145.8946 132.1120 0 89 #> 144 144 0 57.75938 145.4636 132.1715 0 143 #> 145 145 0 58.10718 145.4408 132.2567 0 144 #> 146 146 0 58.45850 145.4183 132.3444 0 145 #> 147 147 0 58.85306 144.9848 132.4093 0 146 #> 148 148 0 59.28927 144.4389 133.2961 0 147 #> 149 149 0 59.69664 144.0047 133.3669 0 148 #> 150 150 0 60.11009 143.5705 133.4403 0 149 #> 151 151 0 60.15871 143.1633 133.4203 0 150 #> 152 152 0 60.20944 142.7576 133.4021 0 151 #> 153 153 0 60.63190 142.3247 133.4804 0 152 #> 154 154 0 60.68583 141.9210 133.4651 0 153 #> 155 155 0 61.16150 141.3777 134.3741 0 154 #> 156 156 0 61.26863 140.8655 135.1917 0 155 #> 157 157 0 61.32773 140.4659 135.1823 0 156 #> 158 158 0 61.81708 139.9239 136.1030 0 157 #> 159 159 0 61.87792 139.5263 136.0971 0 158 #> 160 160 0 61.99422 139.0194 136.9270 0 159 #> 161 161 0 62.49084 138.4793 137.8577 0 160 #> 162 162 0 62.55264 138.0845 137.8574 0 161 #> 163 163 0 62.67041 137.5810 138.6955 0 162 #> 164 164 0 62.78748 137.0789 139.5360 0 163 #> 165 165 0 62.84832 136.6864 139.5413 0 164 #> 166 166 0 62.96261 136.1862 140.3857 0 165 #> 167 167 0 63.07420 135.6872 141.2314 0 166 #> 168 168 0 63.13166 135.2962 141.2419 0 167 #> 169 169 0 63.18836 134.9055 141.2538 0 168 #> 170 170 0 63.24414 134.5149 141.2670 0 169 #> 171 171 0 62.97077 134.0503 142.0226 0 170 #> 172 172 0 63.02338 133.6598 142.0389 0 171 #> 173 173 0 63.07482 133.2695 142.0564 0 172 #> 174 174 0 63.12510 132.8792 142.0749 0 173 #> 175 175 0 63.17418 132.4891 142.0943 0 174 #> 176 176 0 62.85065 132.1287 142.0199 0 175 #> 177 177 0 62.93539 131.6317 142.8777 0 176 #> 178 178 0 62.97973 131.2418 142.8996 0 177 #> 179 179 0 63.02283 130.8520 142.9220 0 178 #> 180 180 0 63.06467 130.4624 142.9447 0 179 #> 181 181 0 63.10525 130.0730 142.9676 0 180 #> 182 182 0 62.77549 129.7072 142.8993 0 181 #> 183 183 0 62.81366 129.3174 142.9229 0 182 #> 184 184 0 62.85057 128.9278 142.9464 0 183 #> 185 185 0 62.88620 128.5383 142.9696 0 184 #> 186 186 0 62.94619 128.0453 143.8262 0 185 #> 187 187 0 62.97795 127.6567 143.8485 0 186 #> 188 188 0 63.00845 127.2683 143.8702 0 187 #> 189 189 0 63.03767 126.8801 143.8912 0 188 #> 190 190 0 63.06563 126.4921 143.9114 0 189 #> 191 191 0 63.09234 126.1043 143.9305 0 190 #> 192 192 0 63.11781 125.7167 143.9486 0 191 #> 193 193 0 63.14206 125.3293 143.9654 0 192 #> 194 194 0 63.16510 124.9421 143.9809 0 193 #> #> attr(,"class") #> [1] "neuron" "list" #> #> $`01_66B12` #> $NeuronName #> [1] "01_66B12-000" #> #> $InputFileName #> [1] "/Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc" #> #> $CreatedAt #> [1] "2016-12-20 17:02:31 WET" #> #> $NodeName #> nodename #> "jefferis-tdisplay-1.lmb.internal" #> #> $InputFileStat #> size #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc 4320 #> isdir #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc FALSE #> mode #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc 644 #> mtime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc 2016-09-07 17:43:52 #> ctime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/01_66B12-000.swc 2016-09-07 17:43:52 #> atime #> 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/Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc FALSE #> mode #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 644 #> mtime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 2016-09-07 17:43:52 #> ctime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 2016-09-07 17:43:52 #> atime #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 2016-12-20 17:02:31 #> uid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 501 #> gid #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc 20 #> uname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc jefferis #> grname #> /Users/jefferis/projects/Shahar/LHNTracing/ParentClusterTracing/02_53A03-000.swc staff #> #> $InputFileMD5 #> 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78.73071 0 7 #> 9 9 0 20.20682 151.2631 78.79181 0 8 #> 10 10 0 20.21779 150.8814 79.75185 0 9 #> 11 11 0 20.28086 150.3797 79.81153 0 10 #> 12 12 0 19.60842 149.8594 79.86080 0 11 #> 13 13 0 19.65637 149.3546 79.91692 0 12 #> 14 14 0 18.96320 148.8225 79.95686 0 13 #> 15 15 0 18.99791 148.3139 80.00922 0 14 #> 16 16 0 19.02689 147.8047 80.06077 0 15 #> 17 17 0 19.05047 147.2948 80.11146 0 16 #> 18 18 0 19.13206 146.6641 79.25827 0 17 #> 19 19 0 19.08270 146.2722 80.21005 0 18 #> 20 20 0 18.28389 145.8321 81.13168 0 19 #> 21 21 0 18.28825 145.3149 81.17654 0 20 #> 22 22 0 18.21314 144.9153 82.12341 0 21 #> 23 23 0 18.20930 144.3951 82.16667 0 22 #> 24 24 0 18.12061 143.9916 83.11131 0 23 #> 25 25 0 18.10995 143.4681 83.15308 0 24 #> 26 26 0 18.73933 143.1192 84.12887 0 25 #> 27 27 0 19.35589 142.7667 85.10062 0 26 #> 28 28 0 19.23688 142.3557 86.03928 0 27 #> 29 29 0 19.21517 141.8298 86.08275 0 28 #> 30 30 0 19.80915 141.4716 87.04907 0 29 #> 31 31 0 19.78462 140.9439 87.09293 0 30 #> 32 32 0 19.65239 140.5239 88.02765 0 31 #> 33 33 0 20.34136 140.0512 88.09965 0 32 #> 34 34 0 20.20454 139.6265 89.03183 0 33 #> 35 35 0 20.77422 139.2557 89.98744 0 34 #> 36 36 0 21.45435 138.7757 90.05605 0 35 #> 37 37 0 22.01294 138.3937 91.00342 0 36 #> 38 38 0 22.56531 138.0034 91.94447 0 37 #> 39 39 0 22.54530 137.4651 91.99122 0 38 #> 40 40 0 23.09524 137.0632 92.92679 0 39 #> 41 41 0 23.07997 136.5189 92.97337 0 40 #> 42 42 0 23.62985 136.1025 93.90348 0 41 #> 43 43 0 24.17738 135.6727 94.82772 0 42 #> 44 44 0 24.84193 135.1486 94.88576 0 43 #> 45 45 0 24.84084 134.5896 94.93287 0 44 #> 46 46 0 25.39059 134.1285 95.85148 0 45 #> 47 47 0 26.05463 133.5821 95.90910 0 46 #> 48 48 0 26.70352 133.6007 95.91951 0 47 #> 49 49 0 27.35778 133.0436 95.97925 0 48 #> 50 50 0 27.89668 132.5314 96.89401 0 49 #> 51 51 0 28.54679 131.9537 96.95636 0 50 #> 52 52 0 29.19474 131.3691 97.02060 0 51 #> 53 53 0 29.84078 130.7781 97.08680 0 52 #> 54 54 0 30.38505 130.2125 98.00681 0 53 #> 55 55 0 30.93573 129.6332 98.92850 0 54 #> 56 56 0 31.58182 129.0198 99.00191 0 55 #> 57 57 0 32.13904 128.4248 99.92871 0 56 #> 58 58 0 32.70146 127.8245 100.85806 0 57 #> 59 59 0 33.34307 127.2075 100.93906 0 58 #> 60 60 0 33.97938 126.5959 101.02159 0 59 #> 61 61 0 34.60973 125.9912 101.10532 0 60 #> 62 62 0 35.16985 125.4025 102.04346 0 61 #> 63 63 0 35.73126 124.8225 102.98270 0 62 #> 64 64 0 35.81064 124.2217 103.04718 0 63 #> 65 65 0 36.37404 123.6592 103.98782 0 64 #> 66 66 0 36.40686 123.0775 104.90574 0 65 #> 67 67 0 36.44522 122.5017 105.82290 0 66 #> 68 68 0 37.01426 121.9734 106.76249 0 67 #> 69 69 0 37.62001 121.4441 106.84764 0 68 #> 70 70 0 37.70486 120.8720 106.90877 0 69 #> 71 71 0 37.75111 120.3267 107.82210 0 70 #> 72 72 0 37.79939 119.7910 108.73369 0 71 #> 73 73 0 37.88459 119.2336 108.78993 0 72 #> 74 74 0 37.96799 118.6807 108.84396 0 73 #> 75 75 0 38.04930 118.1328 108.89573 0 74 #> 76 76 0 38.12833 117.5900 108.94524 0 75 #> 77 77 0 38.20519 117.0521 108.99252 0 76 #> 78 78 0 38.27995 116.5189 109.03759 0 77 #> 79 79 0 38.35273 115.9901 109.08049 0 78 #> 80 80 0 38.42361 115.4655 109.12123 0 79 #> 81 81 0 38.49270 114.9450 109.15986 0 80 #> 82 82 0 38.56010 114.4281 109.19640 0 81 #> 83 83 0 38.62591 113.9148 109.23088 0 82 #> 84 84 0 38.69022 113.4048 109.26333 0 83 #> 85 85 0 38.75312 112.8978 109.29378 0 84 #> 86 86 0 38.79915 112.4581 110.18646 0 85 #> 87 87 0 38.86102 111.9592 110.21393 0 86 #> 88 88 0 38.92179 111.4627 110.23951 0 87 #> 89 89 0 38.98155 110.9683 110.26323 0 88 #> 90 90 0 39.04041 110.4757 110.28510 0 89 #> #> attr(,"class") #> [1] "neuron" "list" #># NOT RUN { library(nat.flybrains) plot3d(primary_neurites.is2, col=factor(finalcluster)) plot3d(IS2) # }