Make summary dataframe for lsm files and their key metadata
make_lsm_df(lsmdir, oldlsmdf = NULL, extrafields = NULL, Verbose = TRUE)
| lsmdir | Path to directory containing lsm files |
|---|---|
| oldlsmdf | Dataframe or path to rda file containing one |
| extrafields | Function to parse extra fields from metadata for each image |
| Verbose | Logical: Show messages about progress/updating of cached data |
dataframe
Will calculate md5 sums for all input files and then use this to update a dataframe.
If an extrafields function is supplied, it should take one parameter, the
list output of parse_key_lsm_metadata, which will include as
an attribute the full contents of the metadata file dumped by the loci
showinf tool. The function should take care to return values for all fields
that it could return each time it is called even if these are NA and
to ensure that values have a consistent data type per field.