|
bunzip2()
|
Uncompress a file with bunzip2 |
|
convertlsmstonrrd()
|
Split Zeiss LSMs and save each channel to a nrrd |
|
jimpipeline-package
|
Package to wrap Jefferis lab image processing pipeline |
|
lsm_metadata()
|
Extract the metadata from Zeiss LSM file using loci bioformats as text vector |
|
make_lsm_df()
|
Make summary dataframe for lsm files and their key metadata |
|
parse_key_lsm_metadata()
|
Parse key Zeiss LSM metadata into an R list |
|
quickhash()
|
Compute a (quick) hash for some part of the contents of a set of files |
|
quickhash.lsm()
|
Compute a quick hash for head and tail of a Zeiss LSM confocal file |
|
runFijiMacro() fiji()
|
Call external Fiji/ImageJ executable |
|
skeletonise_nrrds()
|
Skeletonise NRRD images (e.g. to make them suitable for NBLAST) |